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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78392081_78393236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78392081 - 78393236
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATAAACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTATAAACT
Flanking Amino Acid:
LALIIGMIVLGLRGSQAPVQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.7
0.51
1
68.4
41.8
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
59.4
0.37
1.9
80.31
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023747
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018781
78389577 - 78394197
4621