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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78404518_78404819_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78404518 - 78404819
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAGTG
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
ATCTGCATAATA
Flanking Amino Acid:
ALCSEGKENNETKCALCPAS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
64.9
39.3
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
79
0.65
0.8
76.9
31.9
Minor 5ss
33.5
-1.9
3.6
43.6
45.1
Minor BPS
51.4
0.04
2
66.38
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003212
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003266
78401439 - 78408594
7156