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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78413725_78415266_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78413725 - 78415266
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGCCT
5'SS Class:
major
3'SS Sequence:
TTACTCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTCTTACTC
Flanking Amino Acid:
LLLVKEMAKLELVKKFPRTF
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
61.4
42.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
68.9
0.43
0.9
65
36.1
Minor 5ss
39.6
-1.2
3.3
53.9
44.3
Minor BPS
66.4
0.5
1.6
74.44
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026785
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038738
78411805 - 78420494
8690