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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78415425_78416212_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78415425 - 78416212
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTGAT
U12 Branch Point Sequence:
TTTTCTTTTCCA
Flanking Amino Acid:
LGGRKDLQNNDLNCVLCPTN
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.3
29.8
Major BPS
55.7
0.14
1.4
49.1
46.3
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
39
-1.2
2.9
45.8
44.7
Minor BPS
47
-0.2
3.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026785
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038738
78411805 - 78420494
8690