About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78416357_78417080_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78416357 - 78417080
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGAGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTGTGAGT
Flanking Amino Acid:
LMGLMTLAILFSKGSKDYRT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.4
0.46
1
65.8
44.5
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
48.1
-0
2.3
75.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026785
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038738
78411805 - 78420494
8690