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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78472198_78472893_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78472198 - 78472893
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTCCTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGACATAATT
Flanking Amino Acid:
DEEIRVNVCASYTYGQPVQG
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
78.1
0.63
0.7
76.9
25
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
58.7
0.35
1.9
81.94
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966