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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78473012_78473733_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78473012 - 78473733
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGATAC
5'SS Class:
major
3'SS Sequence:
GCTCTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GCTTTTCTATTT
Flanking Amino Acid:
KPTCEAVTGLLGKDGCLSTV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.5
33.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.1
0.81
0.8
83.9
31.1
Minor 5ss
44.5
-0.6
2.8
55.6
43.4
Minor BPS
47
-0.1
1.8
64.22
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966