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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78473855_78474074_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78473855 - 78474074
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTA
5'SS Class:
major
3'SS Sequence:
GTGTGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
CTCCCCTTTATA
Flanking Amino Acid:
VETIVTENGTGIQIKDYDYV
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.7
40.1
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
79
0.65
1
72.2
42.7
Minor 5ss
41.1
-1
3.2
56.8
47.3
Minor BPS
57.3
0.22
1.7
64.43
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966