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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78474963_78475733_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78474963 - 78475733
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTGCATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ACTTTGTTGATT
Flanking Amino Acid:
DFFDPSFKLRATQAPDDCAD
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.3
0.48
0.9
65.7
34.7
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
52.5
0.16
2.1
71.97
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966