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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78475962_78476186_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78475962 - 78476186
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTGCTTTTGATT
Flanking Amino Acid:
NANHTNFYYVVTAKGKIVLN
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74
0.54
0.9
73.9
35.7
Minor 5ss
39.1
-1.2
3.4
53.8
44.4
Minor BPS
56.7
0.29
1.2
68.02
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966