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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78476245_78477481_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78476245 - 78477481
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAT
U12 Branch Point Sequence:
GCTTCTTCCACA
Flanking Amino Acid:
NGQKQVSISQVPRGTFSITL
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
59.5
0.24
1.5
72.5
43.5
Major PPT
77.9
0.63
0.8
72
32.6
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
49.9
-0
2
63.91
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966