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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78479043_78479619_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78479043 - 78479619
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTTACATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTGATT
Flanking Amino Acid:
RDGDAYKIFRDMGLKVFTNS
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.5
38.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.8
0.69
0.9
78.6
33.9
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
65.6
0.57
1.6
79.64
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966