Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78482164_78482743_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78482164 - 78482743

Intron Length:

580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATCAA

5'SS Class:

major

3'SS Sequence:

CTCTGTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TCATTTGTAATC

Flanking Amino Acid:

VFNYLDKCIQVSAILAESSD

Intron Amino Acid Position:

679

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

67.6

39.3

Major BPS

84.4

0.85

1.1

34.5

Major PPT

81.4

0.71

0.8

79.5

32.5

Minor 5ss

31.8

-2.1

3.1

40.8

45.4

Minor BPS

49.9

-0

61.67

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008721

78466716 - 78495681

28966