Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78483804_78484423_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

78483804 - 78484423

Intron Length:

620

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGTAA

5'SS Class:

major

3'SS Sequence:

TGCAATCAAACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAATCAA

U12 Branch Point Sequence:

TTCTCTGCAATC

Flanking Amino Acid:

DTLIRTLQVEPEGIKKELTQ

Intron Amino Acid Position:

762

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

65.4

36.8

Major BPS

58.9

0.22

1.1

61.7

34.2

Major PPT

57.6

0.17

1.1

51.4

41.6

Minor 5ss

34.3

-1.8

3.5

46.3

Minor BPS

48.9

-0.1

2.2

65.76

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008721

78466716 - 78495681

28966