About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78484849_78485850_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78484849 - 78485850
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGAACTGAACT
Flanking Amino Acid:
GSARAYFSVIGDILGTALRN
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.3
0.84
0.7
85.2
29.2
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
60.8
0.42
1.7
79.19
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966