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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78487978_78489274_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78487978 - 78489274
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATTACTA
Flanking Amino Acid:
ALLEAGHSVEHPVVQSGMNC
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
84.2
33.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.7
0.53
1
67.8
42.6
Minor 5ss
39.6
-1.2
3.3
59.2
45.4
Minor BPS
49.5
-0
1.9
67.42
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966