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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78490274_78490719_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78490274 - 78490719
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACAAAT
5'SS Class:
major
3'SS Sequence:
TTGTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
ATCTGTCTAATT
Flanking Amino Acid:
NPYGGFSSSQDTVVALQALA
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
76.8
33.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
90.2
0.9
0.7
88.7
28.3
Minor 5ss
35.2
-1.7
3.1
48.5
47.2
Minor BPS
49.1
0.01
2
70.34
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966