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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78493249_78494531_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78493249 - 78494531
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCATTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AAGTCCTCATCT
Flanking Amino Acid:
NNHIFFYLQKLSQKAISFSF
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.8
0.65
0.9
69.8
40.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
55.8
0.26
1.8
72.22
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966