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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78494635_78495628_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78494635 - 78495628
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ACTCATACAACT
Flanking Amino Acid:
AVHIYDYYETDEYALAEYQT
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
44.3
-0.3
1.9
62.35
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008721
78466716 - 78495681
28966