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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78511184_78511541_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78511184 - 78511541
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATTAA
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
GTTTCCTTACAG
Flanking Amino Acid:
SNDLQCFNFTIPPVNSVPLA
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
73.9
32.7
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
39.3
-1.2
2.9
49.3
47
Minor BPS
63.1
0.27
1.8
69.63
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347