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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78511699_78513271_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78511699 - 78513271
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAATATC
5'SS Class:
major
3'SS Sequence:
CATGTCTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAT
U12 Branch Point Sequence:
GTACCGTTAATG
Flanking Amino Acid:
DKPIYKPGQSVMFRVVALDF
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
0.9
76.4
32.2
Major BPS
72
0.55
1.2
73.3
39.1
Major PPT
78.8
0.65
0.9
69.3
41.4
Minor 5ss
34.3
-1.8
2.9
42
39.2
Minor BPS
50.6
-0.1
2.1
58.65
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347