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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78516068_78516865_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78516068 - 78516865
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTCTCATTGACA
Flanking Amino Acid:
DSEFTVKVCGVYTYGQPVEG
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.6
0.6
0.7
69.8
31
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
63.8
0.43
1.7
71.5
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347