Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78516978_78517958_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78516978 - 78517958

Intron Length:

981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTATGATGC

5'SS Class:

major

3'SS Sequence:

CTTCCCTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTAAC

U12 Branch Point Sequence:

TCCTTGGTAACA

Flanking Amino Acid:

SPVCQSFTKDLETDGCLSHV

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

61.6

38.1

Major BPS

59.3

0.23

1.3

61.4

43.2

Major PPT

84.9

0.79

0.7

76.5

Minor 5ss

46.8

-0.3

2.8

63.4

41.5

Minor BPS

45.6

-0.3

2.6

61.69

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008164

78510312 - 78541658

31347