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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78518388_78519017_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78518388 - 78519017
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TCTTCTCCTATA
Flanking Amino Acid:
YRRGIPYFGQIKLVDKDNSP
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
82
0.72
0.7
77.1
25.1
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
44.7
-0.4
2.1
59.75
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347