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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78522484_78523984_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78522484 - 78523984
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CCTTCCTTCATA
Flanking Amino Acid:
KTETELSAEMIYSLHPLQDL
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
76.7
0.6
0.7
71.8
26.3
Minor 5ss
45.7
-0.5
2.9
61.3
44.6
Minor BPS
64
0.44
1.8
70.44
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347