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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78524558_78526452_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78524558 - 78526452
Intron Length:
1895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATAG
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TATCTCTTAACA
Flanking Amino Acid:
TASTHHVKSSAEVAREERGK
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
70.5
36.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
78
0.63
0.9
73.7
35.3
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
79
0.9
1.1
82.05
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347