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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78529135_78529593_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78529135 - 78529593
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
CATCACCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCCCATCA
Flanking Amino Acid:
DTQIRTLLVEPEGIRREETQ
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
65.8
0.36
1
55.3
39.8
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
53.9
0.12
2.1
76.79
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347