About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78531306_78531816_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78531306 - 78531816
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGTT
5'SS Class:
major
3'SS Sequence:
CATGTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATTAGGT
Flanking Amino Acid:
KSKTIGYLVSGYQQQLSYKH
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
72.6
38.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.7
0.67
0.9
73.2
36.9
Minor 5ss
37.3
-1.4
3.6
56.2
48
Minor BPS
45.3
-0.2
2.2
71.32
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347