Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78533019_78535927_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78533019 - 78535927

Intron Length:

2909

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGAGG

5'SS Class:

major

3'SS Sequence:

TTTGTTTTTGAAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTACAT

U12 Branch Point Sequence:

TTGTTTTTGAAG

Flanking Amino Acid:

AMLEAGHSSSYTVIRNAFYC

Intron Amino Acid Position:

1094

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

64.7

46.6

Major BPS

0.37

1.3

Major PPT

80.9

0.7

82.9

32.5

Minor 5ss

32.1

-2

3.1

40.5

45.4

Minor BPS

57.4

0.09

1.5

62.4

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008164

78510312 - 78541658

31347