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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78536094_78536371_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78536094 - 78536371
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CACTCCTTACCC
Flanking Amino Acid:
RELQKSAKEVDGSKHWEQKQ
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
63.2
0.39
1.7
67.06
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347