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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78536593_78537239_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78536593 - 78537239
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAAA
5'SS Class:
major
3'SS Sequence:
TCTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCTTTTATT
Flanking Amino Acid:
NPYGGFSSTQDTVIALQALA
Intron Amino Acid Position:
1223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
73.3
32.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.4
0.91
0.7
89.1
26
Minor 5ss
25.5
-2.8
3
29.9
43.2
Minor BPS
68.7
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347