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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78537456_78537854_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78537456 - 78537854
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
CCTCCTTGAAAA
Flanking Amino Acid:
VNGTGCVLMQTALRYNIHLP
Intron Amino Acid Position:
1295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
82
0.72
0.7
73.4
31.6
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
50.1
-0
1.6
58.74
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347