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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78540118_78541132_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78540118 - 78541132
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCGGTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
TCTTATGTGATT
Flanking Amino Acid:
KNHVLLYLENILQKKKKEIT
Intron Amino Acid Position:
1390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
73.7
0.53
0.9
64.4
41.4
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
47.9
-0
2.2
71.03
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008164
78510312 - 78541658
31347