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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78559595_78560304_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78559595 - 78560304
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGACA
5'SS Class:
major
3'SS Sequence:
TCTTTCCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTGTTTCTAACT
Flanking Amino Acid:
DKDFHPLNEKFPLVYIQDPQ
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.6
40
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.1
0.72
0.7
76.7
25.5
Minor 5ss
30.5
-2.2
3.4
40.2
45.7
Minor BPS
60.6
0.41
1.7
76.76
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041074
78552292 - 78589857
37566
ENSAPLT00000006993
78552292 - 78634748
82457