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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78560326_78563386_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78560326 - 78563386
Intron Length:
3061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTATTCTCACCT
Flanking Amino Acid:
NEKFPLVYIQDPQRNRIYQW
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.5
0.69
0.8
74.3
29.6
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
60.2
0.4
1.8
80.74
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006993
78552292 - 78634748
82457
ENSAPLT00000041074
78552292 - 78589857
37566