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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78563556_78565546_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78563556 - 78565546
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTTCTCATCA
Flanking Amino Acid:
VEHSFSVEEYVLPKYEVLVK
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70.4
0.46
0.8
62.6
33.6
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
50.6
0.02
1.8
62.59
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041074
78552292 - 78589857
37566
ENSAPLT00000006993
78552292 - 78634748
82457