Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78569072_78570724_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78569072 - 78570724

Intron Length:

1653

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTCACATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAATTAT

U12 Branch Point Sequence:

TTCTCTGTCACA

Flanking Amino Acid:

EQKKIVIYYLVMAKGSIMLA

Intron Amino Acid Position:

500

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.8

86.3

28.9

Major BPS

64.6

0.36

1.1

55.7

39.9

Major PPT

66.2

0.37

0.9

61.2

34.2

Minor 5ss

39.6

-1.2

3.2

55.5

42.8

Minor BPS

49.4

-0

2.4

70.26

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041074

78552292 - 78589857

37566

ENSAPLT00000006993

78552292 - 78634748

82457