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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78578595_78579182_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78578595 - 78579182
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
ACTGGCTGACCC
Flanking Amino Acid:
VAWAVTPKSLGQVEFSVSAE
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
81.8
0.72
0.8
73.6
37
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
43
-0.5
2.1
52.95
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041074
78552292 - 78589857
37566
ENSAPLT00000006993
78552292 - 78634748
82457