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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78579305_78582140_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78579305 - 78582140
Intron Length:
2836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CTCTTCCCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTCCCCAAAG
Flanking Amino Acid:
DTVIRQLLVEPEGMEVETTY
Intron Amino Acid Position:
914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
66.6
0.37
1
67
26.9
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
49.3
-0.1
2.1
62
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041074
78552292 - 78589857
37566
ENSAPLT00000006993
78552292 - 78634748
82457