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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78582966_78583092_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78582966 - 78583092
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATTACCC
Flanking Amino Acid:
GSARAYFSVLGDIMGTSMQN
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73
0.52
0.9
65.4
39.9
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
55
0.14
2
67.16
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041074
78552292 - 78589857
37566
ENSAPLT00000006993
78552292 - 78634748
82457