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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78589609_78634688_F

Intron Information:

Intron Rank:
34
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78589609 - 78634688
Intron Length:
45080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTATGAC
5'SS Class:
major
3'SS Sequence:
AACACCCAGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
CTTTCTAGAATA
Flanking Amino Acid:
VQGLKPAQVKVYESSEETSV
Intron Amino Acid Position:
1450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.3
61.7
37.3
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
48.2
-0.1
1
37
35
Minor 5ss
33.8
-1.8
3.1
43.4
44.3
Minor BPS
54.5
0.14
1.7
68.86
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006993
78552292 - 78634748
82457