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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78593811_78594756_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78593811 - 78594756
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCCCCTTCCATT
Flanking Amino Acid:
TQEYRAPCTTEEVDQGNV*
Intron Amino Acid Position:
1241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.6
36.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
83.3
0.75
0.8
77.1
31.6
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
45.5
-0.2
1.9
60.73
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980