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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78594799_78594950_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78594799 - 78594950
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCCAAC
U12 Branch Point Sequence:
CTCTCCTTCCCC
Flanking Amino Acid:
QVKVYDYYETDEFATQEYRA
Intron Amino Acid Position:
1227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
45.2
-0.3
1.2
48.2
34.6
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
43
-0.5
3.7
65.58
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980