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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78596244_78596597_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78596244 - 78596597
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GTGCTCTGAATC
Flanking Amino Acid:
HKVFNIGINVSYTGERNVSN
Intron Amino Acid Position:
1137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
75.3
40.8
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
75.9
0.58
0.9
72.9
37.4
Minor 5ss
34.5
-1.8
2.8
42.1
44.5
Minor BPS
55
0.14
1.4
61.2
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980