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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78597990_78598938_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
78597990 - 78598938
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTGCGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
TCTTCTTTGCCC
Flanking Amino Acid:
GLLEKEAVKKDGSVHWQRPG
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
53.7
0.09
1
54.4
28.1
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
47.6
-0.2
3.5
73.02
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980