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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78599105_78599366_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78599105 - 78599366
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
TATCTCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCTTCCAAAAAT
Flanking Amino Acid:
ALLEIPLPVTHSVVRNALFC
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
61.8
37
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
78.7
0.65
0.8
72.9
31.6
Minor 5ss
42
-0.9
3.2
61.4
43.6
Minor BPS
54.2
0.21
2.1
78.17
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980