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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78599933_78601069_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78599933 - 78601069
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTTCTTCATT
Flanking Amino Acid:
GQRYGQPGNTWLTAFVLKSF
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
79.4
29.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.3
0.82
0.7
80.8
29.7
Minor 5ss
38.6
-1.3
3.3
53.2
45
Minor BPS
67.2
0.62
1.7
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980