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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78601840_78602278_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78601840 - 78602278
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTTTGTTAATA
Flanking Amino Acid:
DSGRAYFSVLGDIMGTSMQN
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.3
0.5
0.8
65.1
36.3
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
63.9
0.43
2
76.94
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980