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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78602696_78603879_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78602696 - 78603879
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CATCCCACCCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATC
Flanking Amino Acid:
DTVIRQLLVEPEGVEKETAQ
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
53.9
0.09
1
49.9
32.6
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
70.2
0.62
1.7
81.43
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980