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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78604002_78604650_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78604002 - 78604650
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGGAAT
U12 Branch Point Sequence:
AATGGCTGACCC
Flanking Amino Acid:
VAWLVTPRSLGQVEFSVSAE
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.7
32.1
Major BPS
45.8
-0.2
1.4
51
41.5
Major PPT
81.8
0.72
0.8
73.6
37
Minor 5ss
34.3
-1.8
3.6
49.9
46.6
Minor BPS
43.5
-0.5
2.1
54.65
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980